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Version.string Oracle Distribution of R version 3.1.1 (-)Īny help is appreciated as I am trying to solve this problem for days now. Checked nearly every page on stackoverflow regarding this problem

Some packages like tseries or colorspace can be installed, but others can't. The weird thing is that I have downloaded the big data lite (4.4) image and can install packages without any errors. Installation of package ‘tidyr’ had non-zero exit status Trying URL ' ' Content type 'application/x-gzip' length 345733 bytes (337 Kb) opened URL = downloaded 337 Kb ERROR: dependencies ‘tibble’, ‘dplyr’ are not available for package ‘tidyr’ * removing ‘/home/username/R/x86_64-unknown-linux-gnu-library/3.1/tidyr’ Warning in install.packages : > install.packages("tidyr") Installing package into ‘/home/username/R/x86_64-unknown-linux-gnu-library/3.1’ (as ‘lib’ is unspecified) Warning in install.packages :ĭependencies ‘tibble’, ‘dplyr’ are not available Standard.I can't install packages in R(studio) in the cloud. Particular form of for loop is part of the "ISO/IEC 9899:1999" ( c99)

This is because by default the Intel compilersĬonform to the "ISO C90 with GNU extensions" standard ( gnu89), and this Here, we see that for some reason, the C compiler Under the hood, R is compiling the rgeos package from sources, using theĬompiler R itself was built with, in this case the Intel C and C++ compilers Rgeos_R2geos.c(67): error: identifier "i" is undefinedĪs before, we see installation of package 'rgeos' had non-zero exit statusĪt the end of the installation, so we look back through the output until we find Rgeos_R2geos.c(67): error: expected an expression I/usr/local/include -fpic -O3 -ipo -mkl -qopenmp -xCORE-AVX2 -fPIC -c rgeos_R2geos.c -o rgeos_R2geos.o I/usr/local/include -fpic -O3 -ipo -mkl -qopenmp -xCORE-AVX2 -fPIC -c rgeos.c -o rgeos.o I/usr/local/include -fpic -O3 -ipo -mkl -qopenmp -xCORE-AVX2 -fPIC -c local_stubs.c -o local_stubs.o I/usr/local/include -fpic -O3 -ipo -mkl -qopenmp -xCORE-AVX2 -fPIC -c init.c -o init.o I/usr/local/include -fpic -O3 -ipo -mkl -daal=parallel -qopenmp -xCORE-AVX2 -fPIC -c -o dummy.o yesĬonfigure: PKG_CPPFLAGS: -I/p/system/packages/geos/3.6.1/includeĬonfigure: PKG_LIBS: -L/p/system/packages/geos/3.6.1/lib -lgeos -L/p/system/packages/geos/3.6.1/lib -lgeos_c yesĬhecking geos: linking with libgeos_c. yesĬhecking geos_c.h presence and usability.

p/system/packages/geos/3.6.1/bin/geos-configĬhecking geos version at least 3.2.0. Restarting R and running install.packages() again:Ĭhecking for geos-config. Now, module list will show three loaded modules:Īnother error: a compiler-related problem Yes! So we load the GEOS module before starting R again. p/system/packages/geos/3.6.1/bin/geos-config There's a couple, so we'll pick the latest. We know that GEOS is installed via a module, which should Or in the second case it gives this exact error message but for. Library, in particular the program which can inform it about the setup Both fail and give me a generic installation of package slackr had non-zero exit status. The R installation doesn't know where to find the components of the base GEOS We see that the installation failed, ( non-zero exit status warning at theĮRROR: configuration failed for package 'rgeos', and the line before that Installation of package 'rgeos' had non-zero exit status

'/p/tmp/R_tmp/RtmpkJJdOQ/downloaded_packages' * restoring previous '/home/linstead/R/x86_64-pc-linux-gnu-library/3.4/rgeos' * removing '/home/linstead/R/x86_64-pc-linux-gnu-library/3.4/rgeos' ** package 'rgeos' successfully unpacked and MD5 sums checkedĬonfigure: error: geos-config not found or not executable.ĮRROR: configuration failed for package 'rgeos' Installing package into '/home/linstead/R/x86_64-pc-linux-gnu-library/3.4'Ĭontent type 'application/octet-stream' length 252833 bytes (246 KB) 2: In install.packages(polycor) : installation of package polycor had non-zero exit status. Now we start R and use install.packages(): installation of package admisc had non-zero exit status.